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Pharmaceutical Molecular Chemistry Lab
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An organic chemistry lab that uses the power of catalysts to remake drug molecules only at targeted positions.

AboutAbout the lab
Chemistry for creating and making medicines.
Organic chemistry is the discipline of understanding the properties, structures, and reactivity of organic molecules, manipulating them at will, and producing new molecules with unprecedented functions.
Building on discoveries of new phenomena in organic chemistry, the Pharmaceutical Molecular Chemistry Lab contributes to drug discovery science by developing new technologies for both discovering and manufacturing drugs and by elucidating biological phenomena.
Pharmaceuticals are expanding to diverse medium-sized and large molecules such as antibodies, peptides, and nucleic acids, and the lab develops its own methods to synthesize complex, large molecules efficiently and in an environmentally conscious way.
Key terms
- Deuterium
- Heavy hydrogen, which has one more neutron than ordinary hydrogen
- Catalyst
- A substance that speeds up or directs a chemical reaction without being changed itself
- Peptide
- A molecule made of a few to several dozen amino acids linked together
- Computational chemistry
- Chemistry that uses computers to calculate and predict the properties and reactions of molecules
ResearchResearch themes
In large molecules, controlling where a reaction takes place becomes difficult, so the lab conducts research through both experiments and computation, using computational chemistry and data science as tools.
*Illustrative imageOpening up molecular functions through deuteration
The lab studies the catalytic replacement of specific hydrogens with deuterium in a single step, and has found that iridium catalysts can easily deuterate pharmaceuticals in heavy water.

Remodeling peptides at pinpoint positions
The lab has developed methods that convert finished peptides into a variety of molecules in a single step. It is now developing catalysts that react peptides in a sequence-selective manner.
MembersFaculty
- Associate ProfessorHiroshi Naka
- LecturerTakeshi Nanjo
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Report an errorAbout the images
For images provided to us or used with permission, the source is listed on each line. Wikimedia Commons images are illustrative and were not taken at the lab (they are cropped). Cropped CC BY-SA images are provided under the same CC BY-SA license as the original (version shown on each line).
- Top image: “Laboratory experiment room” 薬品分子化学研究室 / 研究室からの
提供 (cropped) - Opening up molecular functions through deuteration: “Deuterium-glow” en:User:Jurii (Transfered by Lanthanum-138/Original uploaded by Lanthanum-138) / CC BY 3.0 (cropped)
- Remodeling peptides at pinpoint positions: “Structure of a chlorinated peptide” 薬品分子化学研究室 / 研究室からの
提供 - Related lab (Pharmaceutical Synthetic Chemistry Lab): “Verrerie-p1030896” Rama / CC BY-SA 2.0 fr (cropped)
- Related lab (Biofunctional Chemistry Lab): “Zinc finger rendered” Thomas Splettstoesser (www.scistyle.com) / CC BY-SA 4.0 (cropped)
- Related lab (Pharmaceutical Design Lab): “Nanocapsule” GirlBossBME23 / CC BY-SA 4.0 (cropped)
- Related lab (Virus Control Lab): “Virus Particle Icon (NIH BioArt )” Courtesy of NIAID Ryan Kissinger / Public domain (cropped)
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