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Functional Organic Chemistry Lab (Yamaguchi Lab)
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A lab that manipulates π electrons to create molecules with optical and electronic functions.

AboutAbout the lab
Taking on the creation of advanced functional organic molecules
The Yamaguchi Lab focuses on "π electrons," which determine a molecule's color, light emission, and electrical properties, and creates organic molecules with new functions.
The lab values innovative molecular design that makes use of the properties of main-group elements such as boron and silicon.
It combines molecular design based on quantum chemical calculations, the synthesis of new skeletons, and the evaluation of physical properties with state-of-the-art instruments.
In addition to applications in organic electronics, the lab also takes on bioimaging, which uses luminescent molecules to observe the inside of cells.
Key terms
- π electrons
- Electrons that can move spread out between the atoms in a molecule. They determine a molecule's color, light emission, and electronic properties
- Main-group elements
- Elements belonging to the groups on the two sides of the periodic table, such as boron, silicon, phosphorus, and sulfur
- Supramolecular polymer
- A string-like assembly formed by molecules linking one after another through weak forces
NewsLab news
A master's student wins the TCI Poster Award at the 36th Symposium on Basic Organic Chemistry
Results on building supramolecular polymers in a neutral lipid environment published in Nature Communications
Doctoral and master's students win an Outstanding Poster Award and a Corporate Award at the GTR Research Results Presentation 2026
ResearchResearch themes
Focusing on π electrons, which determine a molecule's color, light emission, and electronic properties, the lab pursues "how π electrons behave," such as the extent of π orbitals and interactions between molecules, in order to create organic molecules with advanced functions. Its four main themes are the synthesis of new π skeletons, the use of main-group elements, control of molecular arrangement, and fluorescence imaging.
*Illustrative imageCreating new π skeletons
The lab synthesizes distinctive molecular skeletons, including five- and seven-membered rings such as thiophene, skeletons with strong antiaromaticity, and flexible eight- and nine-membered ring skeletons. It has produced highly soluble organic semiconductor materials and materials that emit near-infrared light.
*Illustrative imageMaking use of main-group elements
By incorporating main-group elements such as boron, silicon, phosphorus, and sulfur into π skeletons, the lab makes molecules with properties that are difficult to achieve with ordinary organic molecules. With boron-containing molecules, it works on creating functions for OLED emitting materials, liquid crystal materials, and sensing materials.
*Illustrative imageArranging molecules and linking them to function
When π molecules assemble, they show properties very different from those of a single molecule. In its research on precisely controlling how they assemble, the lab works in particular on "precision supramolecular polymerization," which controls the length of supramolecular polymers made of molecules arranged in one dimension.
*Illustrative imageTransforming fluorescence imaging
The lab's challenge is to create new fluorescent dyes through original designs that exploit the properties of main-group elements, and to build them into molecular tools for observing cells. With a recently developed, highly photostable phosphorus-containing dye, it has made it possible to observe the structure of the inner mitochondrial membrane in living cells.
MembersFaculty
The members of the Yamaguchi Lab are faculty, administrative assistants, postdoctoral researchers and visiting students, and doctoral, master's, and undergraduate students.As of 2026
- ProfessorShigehiro Yamaguchi
- Associate ProfessorSoichiro Ogi
- Project Associate ProfessorYosuke Tani
- Assistant ProfessorMika Sakai
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Report an errorAbout the images
The top and research theme images are illustrative and were not taken at the lab. They are cropped from Wikimedia Commons images. Cropped CC BY-SA images are provided under the same CC BY-SA license as the original (version shown on each line).
- Top image: “Schliffmanschetten” MediaLab TH Köln / CC BY-SA 4.0 (cropped)
- Creating new π skeletons: “Thiophene-CRC-MW-3D-balls-A” Ben Mills / Public domain (cropped)
- Making use of main-group elements: “Nematic liquid crystal” Ingo Dierking / CC BY-SA 4.0 (cropped)
- Arranging molecules and linking them to function: “Equipment and glassware” Belikov Maxim / CC BY 4.0 (cropped)
- Transforming fluorescence imaging: “Fluorescence microscopy of stage 24 squid embryo with ZEISS Celldiscoverer )” ZEISS Microscopy from Germany / CC BY 2.0 (cropped)
- Related lab (Organometallic and Materials Chemistry Group (Crudden Group)): “Lanthanide nanoparticle solvothermal synthesis apparatus” BekosVonNimmerland / CC0 (cropped)
- Related lab (Noyori Special Lab (Saito Group)): “BINAP 3D” Edgar181 / Public domain (cropped)
- Related lab (Suda Lab): “Laborglas-vriious hg” Hannes Grobe / CC BY-SA 4.0 (cropped)
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